NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208559_100515

Scaffold Ga0208559_100515


Overview

Basic Information
Taxon OID3300026762 Open in IMG/M
Scaffold IDGa0208559_100515 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8541
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024140Metagenome / Metatranscriptome207Y
F067920Metagenome / Metatranscriptome125N
F084461Metagenome / Metatranscriptome112N
F101504Metagenome / Metatranscriptome102N
F102725Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208559_10051513F101504N/ALKLNFDKVLTLNTVSQASLKQIATELNNFDGILFVDDIGAINTEYMRVTTMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPAVFDEIVNNTSFEANIMDKSYRYYNMRIPDNKPFQHPRIKELQHIKDKFENMKVDIDKQKVEAMANNFMTFNSVARRYKIVYNFVKLTAILNGHKTATSEDYRFVSKMLLNNIIESELLERKGISAKFKFNIFLFNVMLMAKYYGNIFHYSKLKTYLNVSKKTIYNYAKMNNIKIDNGYIIYENERMLKVLRNVI
Ga0208559_10051515F102725GAGMKINVYQKLPEPQEGKEYKIVKVEEGKGAFGEYVRVTLEDDDKNQYSTALWIKDTVSAKSKAGAFAIALGSNPEEWEGKRIKIISWTAKNRVIQAIENKKVKQ
Ga0208559_1005153F024140N/AMNWKPSSLSHIVSILALMISVLGINAITFYFMHTLDTTQFFFLQLTNITFGIGMSYYAVNFAMSEKGVTIQSKPETTTQS
Ga0208559_1005156F084461AGGMSFDLASLIKNNKATLQSEGGKIVLRISFDDLVQAIYNGLPEQSRKVVSITHDGKQLIISFDASILSGIISIVSR
Ga0208559_1005157F067920N/AMPADLVFGISDQGLFGAISSTLEYILSFLKTLVEQASKYAIDFLKEMWSNPTQTITFLTLLGVILV
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