Scaffold Ga0208559

Basic Information
Taxon OID	3300026762 Open in IMG/M
Scaffold ID	Ga0208559_100377 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026762 Open in IMG/M

Scaffold ID

Ga0208559_100377 Open in IMG/M

Source Dataset Name

Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10994
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10994

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.7315	Long. (^o)	-110.7113	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, USA

Coordinates

Lat. (^o)

44.7315

Long. (^o)

-110.7113

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024140	Metagenome / Metatranscriptome	207	Y
F049100	Metagenome / Metatranscriptome	147	Y
F067920	Metagenome / Metatranscriptome	125	N
F084461	Metagenome / Metatranscriptome	112	N
F101504	Metagenome / Metatranscriptome	102	N
F102725	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208559_10037711	F101504	N/A	LKLNFDKVLTLNTVSQASLKQIATELNNFDGILFVDDIGAINTEYMRVTTMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPAVFEEIVNNTSFEANIMDKSYRYYNMRIPSNKPFQHPRIKELQHIKDKFENMKVDIDKQKVEAMANNFMTFNSVIRRYKIVYNFVKLTAILNGHKTATSEDYRFVSKMLLNNIIESELLERKGISSRFKFNTFLFNVMLMAKYYGNMFHYSKLKTYLNVSTKTIYNYAKANNIKIDNGYIIYDNERMLRVLRNVI
Ga0208559_10037717	F067920	N/A	MPADLVFGISDQGLFGAISSVLEYILSFLKTLVEQASKYAVDFLKQLWSNPTQTITFLTLLGVILV
Ga0208559_10037718	F084461	AGG	MSFDLASLIKNNKAILQTENGKIVLRISFDDLVQAMINGLPEQSRKVVSITHDGKQLIISFDASILSGMVGIVAR
Ga0208559_1003772	F049100	GAG	MEIRKLTKEEIENLKQNVNHGGRKSKYDEYLREMQIGDWIEIPEINRGVISRAGKRLGMKFSVHYINGKYYIERIE
Ga0208559_10037721	F024140	N/A	MNWKPTSLSHVVSILAIMITLLGINAITFYYVHSPSTTQLLFIELTNITGLIGMSYYMVSFAMSEKGVTIQTKPETTSQS
Ga0208559_1003779	F102725	AGGTGG	MDIKVYEKKPEPIEGKEYVITKVEQGKGQYGEYIRVTLKDSEEKEYSTALWIKDTVSAKSKAGAFAIALGSNPETWEGKRIKIISWTAKNRVIQAIDTSTTTKKGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208559_100377

Overview

Ecosystem & Geography

Associated Families

Sequences