Scaffold Ga0208712_100232

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208712_100232

Scaffold Ga0208712_100232

Overview

Basic Information
Taxon OID	3300026708 Open in IMG/M
Scaffold ID	Ga0208712_100232 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN628 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1561
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location Name	Gorham, Kansas, USA
Coordinates	Lat. (^o)	39.05	Long. (^o)	-99.1	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008549	Metagenome / Metatranscriptome	331	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208712_1002321	F008549	GGA	VSAPRPGDIVVLHTPDGLRFQLVKGVPEGDEAEVLAAAIDRVEAWDKSQELGPWVTNTRPGIGIRAYPA

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