NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208216_100353

Scaffold Ga0208216_100353


Overview

Basic Information
Taxon OID3300026670 Open in IMG/M
Scaffold IDGa0208216_100353 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1111 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1602
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location NameNunn, Colorado, USA
CoordinatesLat. (o)40.81667Long. (o)-104.76667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092327Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208216_1003533F092327N/AMQTDPDPSPSQSSAESAVGLTFVAVVLVSLFVAGSLGVVATREAASAADQAQEPGGGTSDVTATPAALVRQLIVDRFRELMLLREIALRERDRRLLDSVYAPGAAGLARDRAEIARLRSSGRRLDGLRLPVKVFEAHRAGDGTWVVIARIGRSPARLVTGSGRQVRATRASAAVYRCNLVRRDGSWRILGLVPS

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