Scaffold Ga0208548_107974

Overview

Basic Information

• Taxon OID: 3300026627
• Scaffold ID: Ga0208548_107974
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1423
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7219
  • Long. (^o): -110.7021

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F076263	Metagenome / Metatranscriptome	118	Y
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208548_1079742	F081547	GGAG	MPYLRGVFVNFGEETYYLSCGIVNGGSLDTETYTINSPELMMVRMGRDLYIVTSELKLIIPVEPIKTLLSSETSKVYNEISSQGNEVKPA
Ga0208548_1079743	F076263	GGA	MLSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEVTYIKFDCRDHKYTLTIVRTGVAKTMRVSSREQLYRRLFPEYSPEYSGSYTEEFWGGE
Ga0208548_1079744	F080247	N/A	MIVWGKTIECIIDADVNYLNGELFNSQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAVMSFYIKEKDIYANVSLTDPDAIKEFMTMSTYYRKYGVSIPNVLDKIMYHKVPT
Ga0208548_1079745	F061983	N/A	GVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFIHYHELVVVTEGDGLFDCYYGDVIDVKKLKDVGAIVVKEKDIQPVRTMKTLVAKWYNKKLVEEEKAYEMCTKFVM