Scaffold Ga0208548_102489

Overview

Basic Information

• Taxon OID: 3300026627
• Scaffold ID: Ga0208548_102489
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4212
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → Candidatus Nanoarchaeia → Nanoarchaeales → Nanopusillaceae → Candidatus Nanobsidianus → Candidatus Nanobsidianus stetteri (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7219
  • Long. (^o): -110.7021

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090626	Metagenome / Metatranscriptome	108	Y
F097670	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208548_10248910	F090626	N/A	MSRIIKFDNIYFGRNSLVKLFANKTHLENHVDYDGTVLAFLLDVSDFTNTDTLLSHFAIINGNEIRPILVEWNLRTIHGRLLILLNQLPGTHDTKMLLKKFESAIENQKPEIVKYTASQYAKALTDAKGLRQIY
Ga0208548_1024894	F097670	N/A	MNYKVFDKNIYTETDEIITINLKTGEIKYETKMYFYDEKELKEIKDLQEYNLKLYEISQKIQEEFTKFSTKYAKPPIGYIPISNIIYEFMLNKNNIVLIAYANISKVENEISKEITSDTIKIIVKSKTIFNKEWNFESTQNLSPEVKGNVTKIIEKALKSAKAILKSNL