Scaffold Ga0208548_101565

Overview

Basic Information

• Taxon OID: 3300026627
• Scaffold ID: Ga0208548_101565
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6445
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7219
  • Long. (^o): -110.7021

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042426	Metagenome / Metatranscriptome	158	N
F061049	Metagenome / Metatranscriptome	132	Y
F063847	Metagenome / Metatranscriptome	129	Y
F077501	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208548_1015651	F042426	N/A	MEGNVKRLMDLPLKSIYTIGQGETKSGFEVYYLFEYKSGNFSEKADNVYMIYATTVLGEWLTENFEKLKKAIFELEIEFRDSQYNKKIAVPVRVKKIGDKPKAPVQVQEEGF
Ga0208548_1015652	F061049	N/A	MSFFVIKFEKDNSIIKEWIFEGNEDLEKALVEMFDIDFQFIRKIRGLEK
Ga0208548_1015653	F063847	AGGGGG	MRFKKYIFCYDQYSYLQDKVITHHVSIYAKNIKEAESKLEKLGYKDLYLKKKKRRSSY
Ga0208548_1015659	F077501	GAGG	MNKKLLSLLILFSLLIPFANASTNSNLSITFIPENMSQSYYVNIHNLNNSFNATYQFNGINEITNLSSGIYYIKITSQNYNTLDIKLNLTQNTTLELFFNSNIIGYGIQNYYYLIFTVMLIIALFGVLITMVYYMKGVKIK