Scaffold Ga0208548_101531

Overview

Basic Information

• Taxon OID: 3300026627
• Scaffold ID: Ga0208548_101531
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6622
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7219
  • Long. (^o): -110.7021

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062912	Metagenome / Metatranscriptome	130	Y
F087443	Metagenome / Metatranscriptome	110	Y
F099549	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208548_10153115	F099549	N/A	MDTNLQYSYQIPDLKTRFQIDFGNIIEQIVELLTYSDVSSDTRTFDNEELKNKLRAAISYALGLLASTWGYSMSAKVQQDVLVAKNTLIALFDAIMTNPELTYIDLLDIYFELIQKVSIILNYGTPIPQPRTGNYEIT
Ga0208548_1015317	F062912	N/A	MDPSVVLTETYNLFLVSDIIENGSEIDRELENLLANKDYNNMAKTLIYALMHTLNNDPAYKNIRQIYINEIIDLLYTIDRIGFDDERIMKKFVNLLYQFYSYSLQYKINFIADKEKREWVKAKLDELVNIIQWEQ
Ga0208548_1015318	F087443	N/A	MGPKKNYWMVFEDGDNVDYIEKEIAKSALDLNKDVLEMRALIFKAFAYDPEVRAKVTEYIKKNEQRTNQ