Scaffold Ga0208548_101349

Overview

Basic Information

• Taxon OID: 3300026627
• Scaffold ID: Ga0208548_101349
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7283
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7219
  • Long. (^o): -110.7021

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042427	Metagenome / Metatranscriptome	158	Y
F077500	Metagenome / Metatranscriptome	117	Y
F092367	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208548_1013494	F042427	AGGTGG	MSNLETQTRSDIGGASSSSVPLPLTLPGCECPCHVGGEPYSCGAMCWHPQLDADEYVVELASSTNNVDHYVGLFAIYSGGKLKFIVFEPSNGSTQRFEVV
Ga0208548_1013495	F092367	AGG	MSEKNVSINTTQRFKKIDATVAKILTMLYKDIELGLQDDVVVALKLLLYLLHVVEEKATTKEEKEVVRQVKSRIAEYVTGE
Ga0208548_1013497	F077500	N/A	LARRLAYLGLGNYKEVSFEVWTHSTSREEAENDTICRRTRQGFVPVGTFDECLLDPVRRIRRRW