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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026627 Open in IMG/M |
| Scaffold ID | Ga0208548_100474 Open in IMG/M |
| Source Dataset Name | Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16070 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (60.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.7219 | Long. (o) | -110.7021 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F063848 | Metagenome / Metatranscriptome | 129 | N |
| F075084 | Metagenome / Metatranscriptome | 119 | N |
| F085905 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208548_10047412 | F075084 | N/A | VDYAKLMDFTSQNPTGRLFRRAGVAMVYARRLSASWYGYDTRVLLKRSLRRILKWSINYCRVMRKLGLESEYCRRYTVYDEVPCERVSEYDVEVAYSRIIRMIANYNSETVSKLLTKMTEECSTYEVRG |
| Ga0208548_1004742 | F063848 | N/A | VAKKRRSVHDPTLSVIHYQEQLEKMAKAYEQSASRRNQRAVNGFAILKQVQQTVSDYLNEVSEAMKKPIVAQLRVEFLGIAMAFLKASNEGLNSYALAGRMAQIATLKATDIIHTTTLTCAEVGEIINGMLKKLSGVTADPLTFTEDDGICKATVANPLTKLSVASASTGYTVSLTDILKAKTPEEVLIGKQ |
| Ga0208548_1004743 | F085905 | N/A | VEEKLSFPSSRLSQFDYVAMNAYWLNVRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKEFEYGLIYVYSNSRVDTLFIVALTHYFNVKREKEYYRSIPMDALQSVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYVFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRYTRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |