Scaffold Ga0208548_100270

Overview

Basic Information

• Taxon OID: 3300026627
• Scaffold ID: Ga0208548_100270
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23806
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7219
  • Long. (^o): -110.7021

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F063848	Metagenome / Metatranscriptome	129	N
F070317	Metagenome / Metatranscriptome	123	Y
F076263	Metagenome / Metatranscriptome	118	Y
F080247	Metagenome / Metatranscriptome	115	Y
F085905	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208548_10027016	F076263	GGA	MLSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEATYIKFDCRDHKYTLTIVRTGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEEFWGGE
Ga0208548_10027017	F080247	N/A	VIVWGKLIDCLIDADVNYLNGELFNSQFRVKGKFLAFGNLYTLEKMTPGGETIQVCVPIDATFIAYYQGMVAIMSFYFRDRDLYANVSLTDPDTIKDFIMMSTYYRKYGVSIPNVLDKIMYRKVPT
Ga0208548_10027020	F085905	GGAGG	LSFPSSRLTQFDYVAMNAYWLNVRLKYFTDPMLYAVATGIWMINLMDDVDIAETGTQKDFEYGLIYVYSNSRVDTLFIVALTHYFNVKREREYYRSIPMDALQSVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYVFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRHTRK
Ga0208548_10027021	F063848	N/A	VAKKRRSVHDPTLSVIHYQEQLEKMAKAYEQSASRRNQRAVNGFTILKQVQQTVSDYLNEVSEAMKKPIIAQLRVEFLGIAMAFLKASNEGLNSYALTGRMAQIATLKATDIIHTTTLTCAEVGEIINGMLKKLSGVTADPLTFTEDDGICKATVANPLTKLSVASASTGYTASLTDILKAKTPEEVLMAK
Ga0208548_10027035	F070317	AGAAGG	MTQTVANNMPTLEEIKELNLEKVVKDAQEGEVCVVEKILKGKLTDLLPLIKDPATMSQRAMEFIQRRGDDIFYLIHCTTREGRNVKLLVRQSFDPKSTFYNLMKKYKSIKVGDEINIFYNPEKRRYDFLL
Ga0208548_10027039	F056742	GGAGG	MFINEVEKVYQVKVKSCEDFCKFYVLFLSVAEMLYGKHYNYAIFKAITRGRPNLYMCLKCNSTLTAEESVTHTLQHMKQL