Scaffold Ga0208028_100500

Overview

Basic Information

• Taxon OID: 3300026625
• Scaffold ID: Ga0208028_100500
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2305
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F027904	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208028_1005002	F006070	AGG	VTLYPYLVVDLPITDTNTHTYRTNPFNPLAPTQPGISLIRLGESVPPVRAFNIYVYNYANAALNVQVIANENAKNYQYGAFLDGLDYQSESGYPDFNVGSAVAVPAGSLSAPSVYAIQSDFYKDAAERYLSVALTYSTAPTTGFVRAHIDLFYEGF
Ga0208028_1005003	F011233	AGG	LAIPWFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVDLFKESVKEFFESITPSPSTVTTSTGFVAEEVVSAKLPVKVT
Ga0208028_1005005	F027904	N/A	PPEYDLFNLNNGGTAIGTTPASLLYEGQANAAVIVPPDLTLRVKQVVIQNATTSLITVQLLAVTTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKTGYSLAAVSSAANSANVFVKAYFVKGTGSPI