Scaffold Ga0208028_100151

Overview

Basic Information

• Taxon OID: 3300026625
• Scaffold ID: Ga0208028_100151
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4462
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F040183	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208028_1001513	F040183	AGAAGG	VKIKYPFPQRFHYLTVLGKYLTPNTTIVASGANTGPLTANTVCDYVQTPNHKELAINLTIQAVSGTFSTGQGLTAHFDVLDPVEPQNVNVNSSERPPVLELKLNSTAITTAPTTIRFIIANGVATVWINGTSTALGNVNVPYIWQVRFAITGTSPSFSVVGTYEARE
Ga0208028_1001515	F006070	AGG	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANAALNVQMIANENAKNYEYGNLLDGLNYFTEESYPDFNVGSAVTVPAGSLSAPSVEPIQSDFYKDASERYLSVALTYSATPTSGFVRAHIDLFYEGF
Ga0208028_1001516	F011233	GAG	LTIPWFLPFVKGWRYHVPELQRQLLSGIPVSFSGNFTVLNGQFPGYFVSAAVGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPSTVPPVVPTPPRFVANEVVSTRLPVKVT