NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208028_100107

Scaffold Ga0208028_100107


Overview

Basic Information
Taxon OID3300026625 Open in IMG/M
Scaffold IDGa0208028_100107 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5301
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075084Metagenome / Metatranscriptome119N
F076263Metagenome / Metatranscriptome118Y
F080245Metagenome115N
F080247Metagenome / Metatranscriptome115Y
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208028_1001071F080247N/AMIVWGKLIDCLIDADVNYLNGELFNSQFRVKGKFLAFGNLYTLEKTTPGGEAIQVCVPIDATFMAYYQGMVAIMSFYFRDRDLYANVSLTDSDTIKDFITMSTYYRKYGVSIP
Ga0208028_1001072F076263N/AMLSAEDLSAILDDLEDICARIPEGVTFHPTLEIHRNYANEEATYIKFDCRNHKYTLTTVRTGIAKTTRVSSREELFRRLFPEYPPGYSEEIWGGE
Ga0208028_1001073F081547GGAGMPYLRGVFVNFGEETYYLSCGIVNGGSLDTETYTINNPGLMMVRMGRDIYIVTSELKLLIPVEPVRVLLNSETSKVYNEVLSQGNEVRPS
Ga0208028_1001074F087442GAGGMMREGLVKAGDLVIDCKPCYIAGTGFTKDDIYVVSEGTVVFKWYDKIAVVTVGEEGTKVNLLDIIDVRFLVERNENCVAIRL
Ga0208028_1001075F080245N/AMIFVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFIVPHRGHALLFLPTMVIKVDDELMKNLEQTSIEDLNYPLNTISNVFT
Ga0208028_1001077F075084N/AVDYAKLMDFTSQNPTGKLFRRAGVAMVYARRLSASWYGYDTGVLLERSLRRILKWSIKYCRVMRELGLESEYCRRYTVYDEVPCERVSEYDVEVAYSRIIRMIANYNSETVSKLLTKMTEECSTYEVRG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.