Scaffold Ga0208028_100060

Overview

Basic Information

• Taxon OID: 3300026625
• Scaffold ID: Ga0208028_100060
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7302
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F027904	Metagenome / Metatranscriptome	193	N
F040183	Metagenome / Metatranscriptome	162	N
F067921	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208028_10006010	F067921	GGGGG	MNFERINDKILRNGQYLLLSYSGAKNPLQAMFTGFRVVKHNVTTLYYNFATQVPNFLPMAPYGTSPGPTNSPYYIDNFSFSLQQVKNVTDMFKITNTDDAYQVFYGISPSYLRVVNKIQQQFVSVLEQNIYPSPSFVEMGIDGFQSPLNNPSEKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVINRMTLEPLDREELKKAILAGFPIRSLGAVDSSIMISPDNYPGLITLSYKEIYGG
Ga0208028_1000602	F040183	AGAAGG	VKLKYPFPQRFHYLTVHGIYLTPNTTIVASGANTGPLTANTVCDYVQTPNHKELAVNLTIQAVSGTFATGQGLTAYFDVLDPVEPQNVNANSSERPPVLELKLNSTAITTAPTTIRLIIANGVATVWINNASTVLGYMNVPYFWQVRFAITGTSPSFSIVGTYEARE
Ga0208028_1000606	F006070	N/A	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANAALNVQMIANENAKNYEYGNLLDGLNYFTEESYPDFNVGSAVAVPAGSLSAPSVETIQSDFYKDAAERYLSVALTYSATPTSGFVRAHIDLFYEGF
Ga0208028_1000607	F011233	N/A	MAIPWFLPFVKGWRYHVPELQRQLLSGIPVSFSGNFTVLNGQFPGYFVSAAVGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPSTVPPVVPTPPRFVANEVVSTKLLI
Ga0208028_1000609	F027904	GGTGG	MEKYNPPEYDLFNLNNGSTLVGTSPVTLLYEGQPNATVVVPPDLTLRVKQVIIQNTTSSVITVQLQAVTTQTGLPSPVNKTPPIPVPASSAVTLDEDEWSISVKTGYSLAAVSSAANSANVFVKAYFVKGTGSPI