NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208028_100031

Scaffold Ga0208028_100031


Overview

Basic Information
Taxon OID3300026625 Open in IMG/M
Scaffold IDGa0208028_100031 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10425
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033508Metagenome / Metatranscriptome177Y
F047176Metagenome / Metatranscriptome150N
F065947Metagenome127Y
F084462Metagenome112N
F101506Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208028_10003111F101506AGTAGMSEDVVARTRISAVEQRIQNLEAQINDIRATQLRQLERQNYVLALLAISLITTIVNLIVLLVK
Ga0208028_10003114F065947N/AMRTLLSNRIFSLSKIRSVLKHKQNNELPCVAYGTGNLSRRVGRGYFFYDYDTQNEAEVQRFRKYVQHNFYVAYVLFRTKHGVMVMTTLTFPFEQLRKYYDQFQAQFPSDYLWDIPLFLRISEKWDWQTGKVVSAMPQIIDNPKKINIYELIRQDMYPKKWYRTSD
Ga0208028_1000314F084462GAGGMSVPKEKKTVEVLSVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPQTNLTAQQIADAVRKDYAKRKGIVGMQVEV
Ga0208028_1000317F047176AGGMATRIFRFTISLNAGQANNGAQGNPSPFTITAPSGINRRIVEIRPWGTQAFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHQYSIVITNNGSATGTFGVDVVVEESALTGGGAAAPAAPAA
Ga0208028_1000318F033508AGGLAAEAAAAPFVSPTTLRRVSGSSTTQLTIPARIGYRHILYDLFVTNPPSYGYADIAVGTRVFIRLPFQAANCVTVSNPGQKHAGKGFLWGLSDLFGAENLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHSVNGGSDAKVKPFIEILDTLVNSAGTSINVLNENMPTGLGLLDISGRVKATTQFTLLTMFADYVSSGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTQGDLYMNFPARLYFKPDQPYIFKPNHQISVKADVAAVTGTGSTLRVALIGIRERLG

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