Scaffold Ga0208028

Basic Information
Taxon OID	3300026625 Open in IMG/M
Scaffold ID	Ga0208028_100031 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026625 Open in IMG/M

Scaffold ID

Ga0208028_100031 Open in IMG/M

Source Dataset Name

Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10425
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (52.94%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10425

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (52.94%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.7315	Long. (^o)	-110.7113	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, USA

Coordinates

Lat. (^o)

44.7315

Long. (^o)

-110.7113

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F047176	Metagenome / Metatranscriptome	150	N
F065947	Metagenome	127	Y
F084462	Metagenome	112	N
F101506	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208028_10003111	F101506	AGTAG	MSEDVVARTRISAVEQRIQNLEAQINDIRATQLRQLERQNYVLALLAISLITTIVNLIVLLVK
Ga0208028_10003114	F065947	N/A	MRTLLSNRIFSLSKIRSVLKHKQNNELPCVAYGTGNLSRRVGRGYFFYDYDTQNEAEVQRFRKYVQHNFYVAYVLFRTKHGVMVMTTLTFPFEQLRKYYDQFQAQFPSDYLWDIPLFLRISEKWDWQTGKVVSAMPQIIDNPKKINIYELIRQDMYPKKWYRTSD
Ga0208028_1000314	F084462	GAGG	MSVPKEKKTVEVLSVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPQTNLTAQQIADAVRKDYAKRKGIVGMQVEV
Ga0208028_1000317	F047176	AGG	MATRIFRFTISLNAGQANNGAQGNPSPFTITAPSGINRRIVEIRPWGTQAFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHQYSIVITNNGSATGTFGVDVVVEESALTGGGAAAPAAPAA
Ga0208028_1000318	F033508	AGG	LAAEAAAAPFVSPTTLRRVSGSSTTQLTIPARIGYRHILYDLFVTNPPSYGYADIAVGTRVFIRLPFQAANCVTVSNPGQKHAGKGFLWGLSDLFGAENLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHSVNGGSDAKVKPFIEILDTLVNSAGTSINVLNENMPTGLGLLDISGRVKATTQFTLLTMFADYVSSGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTQGDLYMNFPARLYFKPDQPYIFKPNHQISVKADVAAVTGTGSTLRVALIGIRERLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208028_100031

Overview

Ecosystem & Geography

Associated Families

Sequences