NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208028_100026

Scaffold Ga0208028_100026


Overview

Basic Information
Taxon OID3300026625 Open in IMG/M
Scaffold IDGa0208028_100026 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11559
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F021133Metagenome / Metatranscriptome220N
F023140Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0208028_10002610F021133N/AMGRRDDLIRQIYENGNYAIKKICEMEPDDKMANFSATDCIIGTTNAHLALKIAKEKGYPQDVIEYLENQSKQEQWHCRLHIGKPPKLYDFVVAQKHREILLKYGIYVWMGVMPLLGEKIALAKAICWRRDDDPHFVNKFATVDEYYHTTYPLLLLYKYASEEELEKIVELQKEYIVNIFKLK
Ga0208028_10002612F023140N/ALKLHERILISNVFIGLATVPIYIDLKSFPFFIVFGAGILTTLTVLILFFYFLGAKFVGTWAILQKFAVTLPTSFVLAHLVKLLSTNPLLDYVILFVVGYSISTPLIFLTYNVTKWLYGKK
Ga0208028_10002615F008949AGGAGGMSSQTVTLGTQTITPKVQDLGNTYYIEFQVKITKYLNNPVNQTIDVKFICNKYKQVVVPSTNPLSPPTVQTVQKSIQECVDEWYDQHKSVYEVA
Ga0208028_10002616F011097GGAGGMIRDVVLGTSGGTDPFTNLPVGGGPFSNGSIGQLLRFHPNYARLLILVTGLSGTSPSIQFTVGSYYGSINYTLPPISSPQYVQIIGNENKTIITYLNTSWQVLQQVELPYNIFLNGVNVSWSLSGTSPAVTMYIHFEFEDEEEDEE
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