NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208661_105981

Scaffold Ga0208661_105981


Overview

Basic Information
Taxon OID3300026623 Open in IMG/M
Scaffold IDGa0208661_105981 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1229
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063848Metagenome / Metatranscriptome129N
F085905Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0208661_1059811F063848N/AVAKKRRSVHDPTLSVIHYQEQLEKMAKAYEQSASRRNQRAVNGFTILKQVQQTVSDYLNEVSEAMKKPIIAQLRVEFLGIAMAFLKASNEGLNSYALAGRMAQIATLKATDIIHTTTLTCAEVGEIINGMLKKLSGVTADPLTFTEDDGICKATVANPLTKLS
Ga0208661_1059812F085905N/AVEEKLSFPSSRLSQFDYVAMNAYWLNVRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKEFEYGLIYVYSNSRVDTLFIVALTHYFNVKREKEYYRSIPMDALQSVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYVFVMGFLYGLYGRDAEAVFQGVVARHLLPYSILEVIRRYTRK

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