Scaffold Ga0208661_102778

Overview

Basic Information

• Taxon OID: 3300026623
• Scaffold ID: Ga0208661_102778
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2269
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7219
  • Long. (^o): -110.7021

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F023140	Metagenome / Metatranscriptome	211	Y
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208661_1027781	F023140	N/A	VFIGLATVPIYIVLKSFPFFIVFGAGILTTLSVLILFFYFLGAKFVGTWAILQKFAVTLPTSFVLSHLVKHLPADLFLDYIILFFVGYIISTPLIFLTYNVTKWLHGKKV
Ga0208661_1027782	F076262	AGGTGG	MSFNPVIKGSYTLAAPQTVSVAASSSSPVSISFTPLGAGELYVYITLPSGVSASISIGGQSVSLSNGGNQFLIPANTPIGNITINNSNTTAVSVVVWALFIEVA
Ga0208661_1027783	F008949	AGGAGG	MSSQTVQLGTQTITPKVQDLGNSYYIEFQVNITKYLNNPVNHTIDVKFVCNKYKQVPSTNPLSPPTTVQKTIQECVDEWYNQHKSVYEVA
Ga0208661_1027784	F011097	GGAGG	MIRDVPIIGAVGTDPFTNLPVGGGPITGNNSFGQLLRFHPKYARLLILVTGLSGTSPSIQFTVGSYYGSNNYTLPPISSPQYVQIIGNENKTIITYLNTSWQVLQQVELPYNIFLNGVNVSWSVSGTSPSILAYIHFEFEDEEEGE