Scaffold Ga0208661

Basic Information
Taxon OID	3300026623 Open in IMG/M
Scaffold ID	Ga0208661_102084 Open in IMG/M
Source Dataset Name	Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026623 Open in IMG/M

Scaffold ID

Ga0208661_102084 Open in IMG/M

Source Dataset Name

Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2758
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2758

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Yellowstone National Park
Coordinates	Lat. (^o)	44.7219	Long. (^o)	-110.7021	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Yellowstone National Park

Coordinates

Lat. (^o)

44.7219

Long. (^o)

-110.7021

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F076263	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208661_1020842	F061983	AGG	VVPVKVFNDDGLLSEQEFDQVVKTRIYKGLKVLEIKDLGYDSFWRTTHYYELVAVSEGGGQFDCYYGDVIDVKKLKDVGAIVVKEGDSEPLRTMKTLVAKWYNKKLVEEEKAYEVCNTFV
Ga0208661_1020843	F080247	N/A	MIVWGKLIECIIDADVNYLNGELFNNQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMTYYQGMVAIMSFYFRDRDLYANVSLTDPDTIKDFITMSTYYRKYGVSIPNVLDKIMYRKVPT
Ga0208661_1020844	F076263	GGA	MLSVEDLNAILDDLEDMCARIPDGVTFHPTLEIHRHHANEETTYIKFDCRNHRYILTIVRTGVAKTTRISSREQLYRRLFPEYSPGYSGSYTEEFWGGE
Ga0208661_1020845	F081547	GGTGG	MPYLRGVFINFGEETYYLSCGIVNGGNLDTETYTVNQPSLMMVRLGRDLYIVTSELKLIIPVEPIKTLLSSETSKVYNEVMSQGNEVKPA
Ga0208661_1020846	F087442	GAGG	MMREGLVKAGDLVIDCKPCYVAGTGFTKDDIYVVSEGTVVFKWYDKIAVIIVGEEGTKVNLLDIVDVRFLVERNENCLATKL
Ga0208661_1020847	F080245	N/A	MIFVWSARVIIPGFRDEVFVSPALINSYVQITEDVYEVGMFMVPHRGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208661_102084

Overview

Ecosystem & Geography

Associated Families

Sequences