NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208661_101851

Scaffold Ga0208661_101851


Overview

Basic Information
Taxon OID3300026623 Open in IMG/M
Scaffold IDGa0208661_101851 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3023
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056742Metagenome / Metatranscriptome137Y
F070317Metagenome / Metatranscriptome123Y
F077499Metagenome / Metatranscriptome117Y
F077502Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0208661_1018513F056742GGAGGMFTNEVEKVYQVKVKSCEDFCKFYVLFLSVAEMLYGKHYNYAIFKAITRGRPNLYMCLKCNSTLTAEESVTHTLQHMKQLGYKPLYYDENI
Ga0208661_1018514F077499AGGMADLFIFPNESLKPVSYPNITNAEIIFVLTISIPIGGHPESDTPMEEKMKFLSTYTPLEFQKLHYMKTIDKALDILKHLLYTREDNVLFEIANKINSLYDVKELINKVKDVECAKDLKTLNITLTEAKRYIYPDISLSRYASLQARQLGIKKYEYYARLFECYVETDKNLDMLTLFRVSNLVFNFLRINNLSHIIKKMQFKDENINRIAEKIKQRVKITLDAMTDRKPIEPDTNILNSITIRIKEIDLG
Ga0208661_1018516F077502GAGMTDVAHIVIWIEKNLPQEGKLSELIDNVFSLIQEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQTIGTLTEEVKEQVDAYFFKKLNDIYDKYYE
Ga0208661_1018517F070317N/ATTASNMSAMEELKELNLERIVKDAQEGEVCVVNKILKGKLTDLMPLIRDPATLSQKAMEFIQSRGDDIFYLFQCTSREGRNIKLLVRQSFDPRSTFYQLMKKYKTIKVGDEVNVFYNLEKRRYDFLL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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