Scaffold Ga0208661_100799

Overview

Basic Information

• Taxon OID: 3300026623
• Scaffold ID: Ga0208661_100799
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5138
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7219
  • Long. (^o): -110.7021

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F047176	Metagenome / Metatranscriptome	150	N
F072527	Metagenome / Metatranscriptome	121	N
F084462	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208661_1007992	F072527	N/A	MSQQPNRLAELLQQAVLAFGAERVQVLQKIRQYIAATDCTVLNVQLQQIQNINMLRMLQAAGVPQCIQATFYLQINKALKGVTP
Ga0208661_1007994	F033508	AGGTGG	MAAEAAAAPFVSSTTLRRVTGSSTTQLTIPARIGHRHVLYDVFVFGQPAYAYADVSVGTRVFIRLPGSAANCATLGPPGYKVNGKGFLWGLSDLFGAENLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHSVPGGSDAKIKPFIEVLDTLVTTPGNGINVLNENMPTGLGLLDANGRVKATTQFTLLTMFADYVSSGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTIGDLYMSWQSQWYFKPDQPYIFKPNHQVSLKADVAAVTGSGSTLRVALIGVRERLG
Ga0208661_1007995	F047176	GAGG	VSAMATRIFRFYITLNAGQANNGAQGNPSPFTITAPSGINRRIVEIRPWGTQAFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHQYTIVITNNGSATGTFGVDVVVEESALATGGAAAPAAGGA
Ga0208661_1007998	F084462	GAGG	MSVPKEKKTVEVLGVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPQTNLTAQQIADYVKKDYAKRKGIVGMQVEV