NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208661_100799

Scaffold Ga0208661_100799


Overview

Basic Information
Taxon OID3300026623 Open in IMG/M
Scaffold IDGa0208661_100799 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5138
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033508Metagenome / Metatranscriptome177Y
F047176Metagenome / Metatranscriptome150N
F072527Metagenome / Metatranscriptome121N
F084462Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0208661_1007992F072527N/AMSQQPNRLAELLQQAVLAFGAERVQVLQKIRQYIAATDCTVLNVQLQQIQNINMLRMLQAAGVPQCIQATFYLQINKALKGVTP
Ga0208661_1007994F033508AGGTGGMAAEAAAAPFVSSTTLRRVTGSSTTQLTIPARIGHRHVLYDVFVFGQPAYAYADVSVGTRVFIRLPGSAANCATLGPPGYKVNGKGFLWGLSDLFGAENLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHSVPGGSDAKIKPFIEVLDTLVTTPGNGINVLNENMPTGLGLLDANGRVKATTQFTLLTMFADYVSSGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTIGDLYMSWQSQWYFKPDQPYIFKPNHQVSLKADVAAVTGSGSTLRVALIGVRERLG
Ga0208661_1007995F047176GAGGVSAMATRIFRFYITLNAGQANNGAQGNPSPFTITAPSGINRRIVEIRPWGTQAFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHQYTIVITNNGSATGTFGVDVVVEESALATGGAAAPAAGGA
Ga0208661_1007998F084462GAGGMSVPKEKKTVEVLGVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPQTNLTAQQIADYVKKDYAKRKGIVGMQVEV

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