NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208661_100668

Scaffold Ga0208661_100668


Overview

Basic Information
Taxon OID3300026623 Open in IMG/M
Scaffold IDGa0208661_100668 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5854
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075084Metagenome / Metatranscriptome119N
F076263Metagenome / Metatranscriptome118Y
F080245Metagenome115N
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208661_1006681F076263N/ASAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEATYIKFDCRDHKYTLTIVRTGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEEFWGGE
Ga0208661_1006682F081547GGTGGMPYLRGVFINFGEETYYLSCGIVNGGNLDAETYTIKEPELMMVRLGRDIYIVTSQLKLLIPVEPIKTLLSSETSKVYNNMLSQGNEVRLL
Ga0208661_1006683F087442GAGGMMREGLVKAGNLVIDCKPCYIAGTGFTKDDIYMVSEGTVVFKWYDKIAVITVGEEGTKVNLLNIIDVRFLVERNENCVAIRL
Ga0208661_1006684F080245N/AMIFVWSAKVVLPGFNKEVLVSPALINSYVQITEDVYEVGMFMVPHRGHALLFLPTMVIKVDDELMKNLEQTSIEDLNIPLNTISNVFT
Ga0208661_1006686F075084N/AVDYAKLMDFMSQNSTGKLFRRAGVAMVYARRLSASWYGYDTGVLLERSLRRILKWSINYCRIMKELGLESEYCRRYTVYDEVPCEWVSEYDVEVAYSRIINMIANYNNETVSKLLTKMTEECSTYEVRG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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