NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255269_1075078

Scaffold Ga0255269_1075078


Overview

Basic Information
Taxon OID3300026573 Open in IMG/M
Scaffold IDGa0255269_1075078 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)930
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047646Metagenome / Metatranscriptome149Y
F073096Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0255269_10750782F073096GGAGMKKLILVLAVCLSGCSTLSELTQLWPKPHDPVMFDQVVSVKIALDKVNCDDKNWADVETKVNHLKVYSELRNDPQSKSIGQMQEAIARAKASDKKLFCESILKFNKTRVDVIIDAWKGR
Ga0255269_10750783F047646AGGAMLEQLREVAGMGGPAAALANELLVIRENYEQGQLSKEEYDYLINEIADIRAQQELATDEVACRWIVAAAKALISVT

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