Scaffold Ga0255274_1017621

Overview

Basic Information

• Taxon OID: 3300026570
• Scaffold ID: Ga0255274_1017621
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepB_8h (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1869
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035291	Metagenome / Metatranscriptome	172	Y
F052478	Metagenome / Metatranscriptome	142	N
F088827	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255274_10176211	F052478	N/A	GAMLVLAGVFIGLYGLLVLLDDREPDGTVREGIAGAIKRRQSRE
Ga0255274_10176212	F088827	N/A	VNLTQYALQYATVLAHLVPALEEHDSVICGYSAGPQKPDDPQPQNLSICIDNPWREPDQWVTIYSASHCEWWSHGEQYQLTFEQLLAYLRQLPRPLHSFSRYCEEDA
Ga0255274_10176214	F035291	AGG	MAQTIPKAHPLLERVDRLASCEGHWLLIRDGEPETDCGHQWHQTPEAHLETCLREHWRGVSLGFAPSYCGYSDYSRTGLVGLSNYRVMTDKASTPDPNGAVLETGYGWNGRGVVLDLRYVTEDQLETIEALESYPLISEDDHSQLECEGVEADWGRESIADRVRTL