Scaffold Ga0208282_13579

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208282_13579

Scaffold Ga0208282_13579

Overview

Basic Information
Taxon OID	3300026560 Open in IMG/M
Scaffold ID	Ga0208282_13579 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome VIRRA1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	505
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Rauer Lake
Coordinates	Lat. (^o)	-68.8136	Long. (^o)	77.9341	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102170	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208282_135792	F102170	GGAGG	MSDDDETVIVMTKGHVYHTDETCYRITDRAREWDLDEALNDGRYECGHCQADENLGSKHHGERLATKLSKADPDEVAPTEFDRERASVSLAWFVAVWLAIMAAS

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