Scaffold Ga0208282_11819

Overview

Basic Information

• Taxon OID: 3300026560
• Scaffold ID: Ga0208282_11819
• Source Dataset Name: Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome VIRRA1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1090
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Lake
• Coordinates
  • Lat. (^o): -68.8136
  • Long. (^o): 77.9341
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011984	Metagenome	285	Y
F059487	Metagenome	134	Y
F085171	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208282_118192	F085171	AGGAG	MSKNKHTDLDGLIDLDSRSLIKLGNSAVVSIPSAEDLGIIGNIEELDAAVSVRLVESNQIVIEARVDLSNVDLGDIDLTLD
Ga0208282_118193	F011984	AGGA	MRPIICDCCQIRIDEDWTGPAIVVKVHNGVDSDVAGDYCIDCVGDISDAIRSVIEDTTGTGVISTNE
Ga0208282_118194	F059487	N/A	RQWIRSMNPIDRFVDRVVIRSACPVEPCASQSWVKMRVGAVAFLATMPGLYMMNQGFETVGWIVAVANMLIAINIISTRVNQRIEHGHTCGRTDISVNSEDQQ