Scaffold Ga0208282_11113

Overview

Basic Information

• Taxon OID: 3300026560
• Scaffold ID: Ga0208282_11113
• Source Dataset Name: Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome VIRRA1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1772
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Lake
• Coordinates
  • Lat. (^o): -68.8136
  • Long. (^o): 77.9341
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020827	Metagenome	222	Y
F058558	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208282_111132	F020827	N/A	MKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDRIEVEHYLSGGKMITEVTVTASDVLPVVKNIEPVEKPDHL
Ga0208282_111133	F058558	N/A	AVVKTDDHDVAENAITAGLSWVGVNDDEYRMLWTRDHFNTSGPNHVAAIFIVPKEYMMDLPTLVERGNAISINEVELQSIDV