Scaffold Ga0179587_10009210

Overview

Basic Information

• Taxon OID: 3300026557
• Scaffold ID: Ga0179587_10009210
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5077
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F050089	Metagenome	145	Y
F073812	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179587_100092104	F006757	GAG	VLPPIKTTIRAALLSLAAYKEVSTPQLLAAARALPGGTKVHCPDRLTAIVLLLGTRLADL
Ga0179587_100092105	F073812	GGA	VTDSRQDLESALSPLAWILNFIWDTFRLMFWFFMSPIFFTWCFHHPVEARLYLVSAIPLLWNGNWATRGVLVFFVLLIASLFGKTMHRFCWGSIRLVLVAGLIWYIYMIFKLA
Ga0179587_100092106	F050089	AGG	MARQVFVVLPLPGREMCDFCCTSPTVRLYACRNFVVPRTKHAVFQHELIGAWAACDRCAVLIDSGHWSHLTDRALRRFANRYDVPKDEWRGVRKQLGEIHQLFKEHMIKES