Scaffold Ga0179587_10000713

Overview

Basic Information

• Taxon OID: 3300026557
• Scaffold ID: Ga0179587_10000713
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14141
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007493	Metagenome / Metatranscriptome	350	Y
F027294	Metagenome / Metatranscriptome	195	Y
F029877	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179587_1000071315	F029877	N/A	TEFPRKATNVSLTPERQVPAFVLGPMRRGLAESVEMSREMSRSAVAGD
Ga0179587_100007132	F007493	GAG	MRLPGEGGALVIGTSSALIGAVVFLLLILVWIRADSSSRRLPSVLDSWLPDQDDAAEVCPPEFVAQIFSGQDLAFILRLESPDLKRHFLRERNAVALFWVQQTSAVIRRIMRRHLEASRLSADIEFAMEARIFLQYAKLRLLCAVLFLLIGLAGPQKLHAIALYADRLTQRIGSVLREFESGVRMREMDDA
Ga0179587_100007136	F027294	GGA	MRVFKGFAILLTVTMISVGTFMLYDPMAQRSAAASDSVIAGAVLFSLALTLLYFLSRPAA