Scaffold Ga0179593_1228871

Overview

Basic Information

• Taxon OID: 3300026555
• Scaffold ID: Ga0179593_1228871
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3071
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002770	Metagenome / Metatranscriptome	531	Y
F003044	Metagenome	511	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179593_12288713	F002770	AGG	MNITRILPLRAFLLITLLILFACLTYGTEGRPPAVHIVRNVAWNDFISQINFLPDDSPQDSFDKELLVVQKFLKAHETEVRVGVYDLEVFRAIDQARARLQKADMDLETLRKELSYKEAQAKLGR
Ga0179593_12288714	F003044	GGAGG	VEFRTAIVCSKCKQPIVSGQGYGYVGFKIPGTAGYHFFHRRFRTGDCWDDF