NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179593_1225105

Scaffold Ga0179593_1225105


Overview

Basic Information
Taxon OID3300026555 Open in IMG/M
Scaffold IDGa0179593_1225105 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1841
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002414Metagenome / Metatranscriptome561Y
F013395Metagenome / Metatranscriptome271Y
F018044Metagenome / Metatranscriptome237Y
F097464Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0179593_12251051F097464N/AAVPSGAALVYVGQTIQIYDTTLTTNRGTCNVVACDPINAQTITVDVVPGGTVATDVIVHDGLSGAQPVSLFGIKYHQNAATTGTWLNLNRATYPVQLQTPRVNAGNAALTPSNVRLAINKVRKSLGINHVAKLIAYMAVEQEHAWENLGNHREPDHQRRRQRRWQ
Ga0179593_12251053F013395N/AMRRAFISGGVLLLCGAIAARSKTDPLLFVFLRVDREHDIAILRPMIAPDIGVQLDSGTPQVAPGTVLTCEMLAREHDAIVAGQVGKIADILLDCGDHKFVVKTLDFRPQRK
Ga0179593_12251054F002414AGGMIKVLRETHETPKSVAHSLEIAGGINRFHEPNYRAVWGWNRLAWIGGKFAERDPATGALLREVVELRQEPKYPAVNRWHIEKWMPPETYGSPRAWWAQTMEIEGGPKHSGVRSISSARRI
Ga0179593_12251055F018044AGGVRGEYEHCFTLESPRGEFVQLTTATVAEHIARAIEWSRRHPRSAGKRALQDREQRQDRSYDAYAYDILDDAVPAFHRQPFVTVA
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