Scaffold Ga0179593_1197417

Overview

Basic Information

• Taxon OID: 3300026555
• Scaffold ID: Ga0179593_1197417
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2721
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000083	Metagenome / Metatranscriptome	2471	Y
F032790	Metagenome / Metatranscriptome	179	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0179593_11974171	F000083	N/A	EKLTSQLNELEATERVLARYSTGTQARKMSSAKMPTTGVKAAAPARLRGRRRRATAKSAIGSRRSPNLNDQVLALATGKTQQEITAACKGVRPNHVGAAIARHKRAGRVEERDGKLYATQPSGTEQRVAV
Ga0179593_11974173	F032790	GGA	MSVDRETQMTITRREILHRVPQRLKLTEQQSWQDIAQSKGMTHLQRLPEAPEGQFLVHNSVRPTHPSRMVSARGCKLKMSTLNPATVGGPELGTHYRVKLKIPVRDRAARSTDFA