NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209577_10721275

Scaffold Ga0209577_10721275


Overview

Basic Information
Taxon OID3300026552 Open in IMG/M
Scaffold IDGa0209577_10721275 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)562
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018981Metagenome / Metatranscriptome232Y
F023802Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0209577_107212751F023802GGAGGVNTYLQDRKISAAQDYERPSVEVLHLICKLRWIGMEEEAERVEMRLRETTPAGSVIAAAHETD
Ga0209577_107212752F018981N/AAEVELSLKLSKKLTDAHSVPDAVAAYQEWLSDEMGARAEDTRLLMSSGQKFMDASSRLLSSNWMSASTTT

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