Scaffold Ga0209577

Basic Information
Taxon OID	3300026552 Open in IMG/M
Scaffold ID	Ga0209577_10002340 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026552 Open in IMG/M

Scaffold ID

Ga0209577_10002340 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18312
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (89.47%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

18312

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (89.47%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007854	Metagenome / Metatranscriptome	343	Y
F018762	Metagenome	233	Y
F052529	Metagenome	142	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209577_1000234010	F052529	GAGG	MRQIAGFALVLVLVGTGGNLCFAQSKPMAAMRQPGGIQPSSAAETGVVPLTYPYSISTEPHFAVFVEFPKADSIRRIALGDSNYFLAEADKTDPHYAIVKQIEAPAAKSKTPLETNMLVYMASGRVVNITLKAGKLEDTAYSIDYSVPTAQPKDDPPPVSKEELEKRLRDQERSEIAEEMIAEVKDHPKSQPGVVAGGLDLRFYGTKHLGALALVAFDVENMSTATVDLEGPQVNLITASNNPKDRKKPLVKTEPVEVTQSVVSSKQLSPGERATCLVAFKPPMHDSDQQVVLSISNRAMADKPATYRLE
Ga0209577_1000234013	F018762	AGGA	MRQHSRRFVVLSLATAIGLLVPVTARAFIGTMPVIDWTAVVRIGRQIGISQETLNTLGLYVQQYNRINAGVQEGVRLVRGRQLRGVLDQVVGSEFPQFAQLQRDFRSVLIDPSVLRADLELTYGSTPSRDFPISRKKRMDAADATATLGLLEASRAEMVSQQEELDADDIESRAGMASPGGAAKLSAAANGAMLRSQAYDQRLLARLMRLQALNIARENSLEKEREQSREDQVSAVSNLVGNMKLSYGIGDKVGQ
Ga0209577_100023402	F007854	GGAG	MNTLIANQYGRVQGEAGGCGLTLCVTAQTPRRESVELQTRIDSVEQQLHLLAILRAVERRIEQFQLRDGEAGESADQQSPFDETVCGEDDLFRSNGSPSKNKIYGRFSQFLVYEQLDEGRLRVFFAVRDDVKRVARFDLHPGEVQAMHSLARRALFSCEQIGLLLRDELSVSVTLSASSHGLRFSVQSPLWRSEFVISKANDLATLTVFTRRAINQEKTIPIKFGGEVNQLSLRRRTDGQVLAEFQYDGAMERVALSTLQLYELEILAQYALHRAFEPMSFVAGTPVQPETATAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209577_10002340

Overview

Ecosystem & Geography

Associated Families

Sequences