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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026552 Open in IMG/M |
| Scaffold ID | Ga0209577_10000045 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 102961 |
| Total Scaffold Genes | 94 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 80 (85.11%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001684 | Metagenome / Metatranscriptome | 652 | Y |
| F002424 | Metagenome | 560 | Y |
| F014186 | Metagenome / Metatranscriptome | 265 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209577_1000004541 | F001684 | GGAG | MVNKSDSAISRREFARRAALVSAAASLSPSNLLSPESVAARLPTQQAPNAPKPSPEGHAEVESRIQSIYAQYGRRLTDSQKADIRRLVTETQPTLDRLRALATDNGDGPGLYLKPLMERERTPSPMPATQKPANPPKNS |
| Ga0209577_1000004566 | F002424 | GGAG | LRGYPIVLSSAALCFFLGSFSSPAQEAKGAPAAPSPRWYNPTKYNPLKLIKRGSKSANEELASSGNLEARLTHQLQVQGILPQDKNLQDLCSAFRELAECVASLRVSRTLQIDFTCLKWDVTGIKPKPVADSCAGPAGGKAMGLHRAIDLLKPDSNAKAEAKNTLKRAHEDIKDAGE |
| Ga0209577_1000004575 | F014186 | GAGG | VILTTTPLSATKQTRSPTIPIGLDQLLVALLLLLPALGRAKALPQEREREPLGPLTSIGETYVNDSPAPAEITIFSGDKVRTGESGSATFNMSGKGSLKLSPRSQVLFSGKYEYTAELEAGAVVMNSVSGPNGFTLRIGNDVVVPSIKERTASASIDRAPDGSFLVTCSDGAVGVLTLQGTSGLFLQVGQSLSAAPNGQLFPVVQEAATTGRFLSGRSSSRAQKAKNNYTGWGLLGLAAAGAAGTVAALSHGGGKQSISPAAP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |