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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026551 Open in IMG/M |
| Scaffold ID | Ga0209648_10137419 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1949 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Laytonville, California, USA | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000624 | Metagenome / Metatranscriptome | 977 | Y |
| F002853 | Metagenome / Metatranscriptome | 526 | Y |
| F064567 | Metagenome | 128 | Y |
| F099022 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209648_101374191 | F002853 | GGAGG | MGRGAQFSTRQLTDQERANIDALNQQFLGQQQQVGNLLLPQYQSILNNPGLSPADKAAVTGQSQGALASAFDSLQQSAQNRLARTRNSAGFGELADELARQRGIAQAGQAQRNQLAFTNTAFQRQMAALQGLSGLFGVDSSLLGRTLGIPAELLNVRANASRGNGGGFFSALGSGLGSTLGALPGAFF |
| Ga0209648_101374192 | F000624 | N/A | MPASWFTILAAIVSGAVQFVLFLRWLHRRMRNDEIMRAFVRDIATNHLPHIYNALQKIATQQGIELDETPLVRFVDLNGHSRRS |
| Ga0209648_101374193 | F099022 | GGAG | MKLSSKKVVLAVAFAVPLLLLFADEYPALRFRGDGRFSGGPVFGYWIRLGPIPFHRTGEYVFHLRGMPNEEMSLQLYAEGKTGDSRSELTNLNTQLEALLVDQNGRTVCRAAGVVPKENEPCDDCKIPTDEEIAARFQREWVLMSGPDETAYWHENCLRMRLKPSDSYTLTLRIQAVDPKTPKINLIPTLEGGQLDLP |
| Ga0209648_101374194 | F064567 | N/A | MGPPSQLVVLARKAGAAQSLDPALVCAVVEQESAWNPWAMRYEPAFFSKYVASLYTNNKIAATEAYSRGFSWGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |