Basic Information | |
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Taxon OID | 3300026551 Open in IMG/M |
Scaffold ID | Ga0209648_10114694 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2185 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Laytonville, California, USA | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000703 | Metagenome / Metatranscriptome | 928 | Y |
F000781 | Metagenome / Metatranscriptome | 895 | Y |
F106044 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209648_101146941 | F000703 | N/A | MLVRRYQESDLDALKGIHGAQNFPYPFPDLANPLFLTRIVVAEEGQGTDREEKIRGAALLRLTAEAYLLLDPRAGTPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAKKFGKRIACLGWLRDDAWTPYCKKLTEAR |
Ga0209648_101146942 | F106044 | AGGAG | MPLTTHSATWDFNPADTVTINGTFTFDLNDPSDSQTVSAVLITLQGRTPQVTLTQSDNATISVKLTI |
Ga0209648_101146943 | F000781 | N/A | MLTVAQLAPLKDRDPYLYETLVKIVASVNATSQRAGVDPSTPAPAPSPIASISVQASNGWFDISITDPSAERPGLFYFAEWDTTPAFGAPRVYFMGASRNLYIQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPITVAGGGASGPAPLPSSGSGVFPNGVPRGGNGFGIHPGSRIVRQSIL |
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