Scaffold Ga0209648_10048424

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10048424
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3651
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003496	Metagenome / Metatranscriptome	483	Y
F004193	Metagenome / Metatranscriptome	449	Y
F009615	Metagenome / Metatranscriptome	315	Y
F011418	Metagenome / Metatranscriptome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100484241	F011418	N/A	VFPPMTTPPGRYDKRTAATVAVMLTSPERAFTTELALTENISERGARVLTKKVWWANESVVIKSLEGDLQSEARVVYRQPVRENVFAIGLELLGPKGHWRGKSD
Ga0209648_100484243	F003496	AGGAGG	MPATQPSKELRAFCHEHHVEMRLNKNALSSKGDNPTQTLAYACTERDCLVHYNTYRGYFILSQKGITNEPDTVPSVRCPHDGTPMYLAEIDLRKRAFRLWICPLCDRRRTNEEGLIGSASQGI
Ga0209648_100484244	F009615	GGAGG	MTQEPALELPRVVARAHHLGECLPSPSFARLLVGAPRSLERSEARDHLNAPLWLTSLQRPGVFEVVPTKNVSRFGVQMVTQEFWEPADLVLVSSPPGFCVQGSVAYCKKLPSEDYILGIRLDAPVEKWMEQLGLGESFQNLA
Ga0209648_100484245	F004193	AGCAGG	MLSLYVPQGRRSARVMSKRRASLVINLDRKAKRLACLVVDSSKEGFRVRGSFDLRRGQVVELILDEDMPNPERCTVIWVGKAGSKQEGEVGLETV