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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026551 Open in IMG/M |
| Scaffold ID | Ga0209648_10045720 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3771 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Laytonville, California, USA | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002143 | Metagenome / Metatranscriptome | 590 | Y |
| F025584 | Metagenome / Metatranscriptome | 201 | Y |
| F035065 | Metagenome / Metatranscriptome | 173 | Y |
| F048436 | Metagenome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209648_100457202 | F048436 | GGAGG | MSSLKRWRRVGQGQFHKWEQAGEEFEGTWRGAHEGRYGPLGTLETSEGLITFPLPAALLDRLRRVGEGAEVLIQYTGMQTSKTGRSFKGFEVYVAGDGALAEPVQHAAASRQAESPVSDGDHKEV |
| Ga0209648_100457204 | F002143 | N/A | MAPTSDPNEAIQRFMAQWSPLTRAEALHLALQSLRDRVEPDRVLACELAWEVHAKGYWSQVRNADGTTYPTEEDYFRHVLGLASWRTAYKRLAIGRMLTRFEEPERSLLRSSLAAVGLAKATVVAPAIERFEEWRTWLQCASGLSTMLLQAKVSEALDALPRGREPAPPGERFRRDVLSAMPDIEAMELVERFFHLGKRVVGSPNPIAIFLAGCRECLPEWELQAAKRPSASSSVSTSSVCPRGQNSV |
| Ga0209648_100457206 | F025584 | GGAG | VLWVHHEAEELRVHYRATVNVDDARALVVTLLASGQVPPLQATLLALEDAAGRPVLQRFWGTACPLDEVVYLILFINERCLVFALSG |
| Ga0209648_100457207 | F035065 | GGAGG | MTDREVEAISDFLRHFGSFGCRQICVRRTEPKPRTPDDVGRFVLETLAAWRAEGLDAERLYKVATIAIHFDAYKLPWSMCMPACCRPWGEVEPVCPPGPGRPLTGAQLQQALLRAVPIGPPPAPDDLDEDLKRMGLAP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |