Scaffold Ga0209648_10035662

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10035662
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4324
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000703	Metagenome / Metatranscriptome	928	Y
F000781	Metagenome / Metatranscriptome	895	Y
F002853	Metagenome / Metatranscriptome	526	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100356621	F002853	GGAGG	MGRGAQSNTRQLTDQERANIDALNQQFLGQQQQVGNLLLPQYQSILNNPGLSPADKAAVTGQSQGALASAFDSLQQSAQNRLARTRNSAGFGELADELARQRGIAEAGQAQKNQLDFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANASRGNGGGFFS
Ga0209648_100356622	F000703	AGG	MFGFRTPSFAYTVAAQAKARATEMLIRKYRESDLAALRAIHSAQGFDYALPDLRNPLFVTKLVLSDENVAPPFRAASVPINDEAASRDAGLEAGATRERILGAALLRLTSEAYLLLDPQAGTPRERWQWLLALHATAERDAWQRGLEDVHAWLPPAIAKKFGKRIARLGWLRDDAWTPYCKKLTEAR
Ga0209648_100356623	F000781	GGA	MLTVAQLAPLKDRDPYLYETLVKIVASVNATSQRAGVDPSTPAPAPSPIASVSVQASNGWFDISITDPSAARPGLFYFAESDTTPAFGAPRVYFLGASRNMYIQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPIAVAGGGASGPAPLPSSGSGVFPNGVPRGGNGFGIHPGSRIVRQTLL