Scaffold Ga0209648_10028914

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10028914
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4841
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001757	Metagenome / Metatranscriptome	641	N
F002103	Metagenome / Metatranscriptome	593	Y
F027142	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100289144	F002103	N/A	MSTDEPFRTDYEFLKGVDYIFVSLDRSLSGEECHELAEKYFETHKQMTLPGQVLLVDLRPLADVTPQFRAVSKGHTFTPQR
Ga0209648_100289145	F001757	GGA	MMRVLKPLQDKATTGAGKRLVLPEPRRLRFLIRGEGPVSAGAVTIECCPESTKAGKFWMELATIPVPADNGLAQYYTEEASGLFRARISRPVSNGTVTVTPLVSRGRPDRPDRTKVV
Ga0209648_100289146	F027142	AGGCGG	MSNKNNQPESAEKKKREGEVRDLKPKIDPKGGASDAKKDDEGGSGRTGEADFMQGSK