NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10027123

Scaffold Ga0209648_10027123


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10027123 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5007
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000885Metagenome / Metatranscriptome849Y
F001619Metagenome / Metatranscriptome662Y
F040483Metagenome / Metatranscriptome161Y
F058741Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_100271231F058741GAGMDLYRTAESWTGIPGTIAPADGNLAAGVAPGFSPASRQGGEGAALKGGATTPPADLGPNNERLDDVKPELVNALRELVRQYRQEGIVARRHEIRRIRQARLFWQGLQYAWWNPNDMNWHLPFEQR
Ga0209648_100271232F001619N/AMLNWFHKIVQTRYVGLLEADVSRLRAENRALMNSLLGTAGFPPVEFPEAPKPQPLPRLRKRSWHQLQAWRETEANRESSASFDERMSERANGPVPHS
Ga0209648_100271234F000885AGGAMANARTIFIGEVTQIAGFASVIAGVVLSLHHWPAAAALIGGGAAFYVGKRLRAQ
Ga0209648_100271236F040483AGGMHREGDGRLSKSIWAQEPSVTAERKLWRAVLEQAYMDAELPLSSDGSAPIERVLARQLLRADCPFEAASLALVCEFADVPADRVFLWARQRYPLAA

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