Scaffold Ga0209648_10027123

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10027123
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5007
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000885	Metagenome / Metatranscriptome	849	Y
F001619	Metagenome / Metatranscriptome	662	Y
F040483	Metagenome / Metatranscriptome	161	Y
F058741	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100271231	F058741	GAG	MDLYRTAESWTGIPGTIAPADGNLAAGVAPGFSPASRQGGEGAALKGGATTPPADLGPNNERLDDVKPELVNALRELVRQYRQEGIVARRHEIRRIRQARLFWQGLQYAWWNPNDMNWHLPFEQR
Ga0209648_100271232	F001619	N/A	MLNWFHKIVQTRYVGLLEADVSRLRAENRALMNSLLGTAGFPPVEFPEAPKPQPLPRLRKRSWHQLQAWRETEANRESSASFDERMSERANGPVPHS
Ga0209648_100271234	F000885	AGGA	MANARTIFIGEVTQIAGFASVIAGVVLSLHHWPAAAALIGGGAAFYVGKRLRAQ
Ga0209648_100271236	F040483	AGG	MHREGDGRLSKSIWAQEPSVTAERKLWRAVLEQAYMDAELPLSSDGSAPIERVLARQLLRADCPFEAASLALVCEFADVPADRVFLWARQRYPLAA