Scaffold Ga0209648_10027000

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10027000
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5019
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025253	Metagenome	202	Y
F031042	Metagenome / Metatranscriptome	183	Y
F040564	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100270002	F031042	GAGG	MCLQSVMRTRVGLAALALLVGACTSGTPLPQPPPPGAGVTINDIRGSWRGTWGGAPVSLLITDQEARAGYSGLYVGNYQVLGHDRPGVAGILTSQIDNAQTSVRAQGWFGGVGDQLTLRLLADSPSGQQRLTLRPDGPNRLVGVGDSSFRWGPAGPIELTREPAR
Ga0209648_100270003	F040564	AGCAGG	MATLTALCCDEATVVLCSRLRKLGFEVSWLYMDELRHGRIEPEALADSGPPDLILYDLDEPVDESLRLLTLFRSLPGMGAVPVVLLRTAQMPLPPLDAPGIVAVLTRPCEAALARTIIEAALRDGVDGLDEAA
Ga0209648_100270004	F025253	N/A	MRAPAATLLWLVVCGAAAAAGPTDIARVDEFIDAPRALFGRTRAELERTLGTPTDVRPRAGAVLLSWPGLDVAVSRSSRVAAVVLRAAGRPLPHGLDVGTPRARVEAVLGEAQDATDERYAYVDADGFPNSVEFFFRAGRVTRIEWRFWAD