Scaffold Ga0209648_10022691

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10022691
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5485
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014601	Metagenome / Metatranscriptome	261	Y
F028763	Metagenome	190	N
F104895	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100226912	F014601	AGGA	MTGSTGDTRRPSPIPRAILAGILAGIAAAVISYYVINSILGLIIGFIAGAIVGSRTVLLMHKAREQDQ
Ga0209648_100226913	F028763	AGGAG	MNEPARSKRRIALGAFAIIMGCLSLVGLSSTSYYFGIGVFGGTYGAVMIALGVALIAKKEAVTQ
Ga0209648_100226919	F104895	N/A	LAQRRHSHSARTVHSVVDDELRVSTHKSIIKTLGRQYTDAAQFFVELLVNSWMWGEATKVEIRIPENGSNIEYEEWGNGMDLIGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTITLTENLIDKHWDATDQSTWRPLRLIQAPLDHDGLRIRIRSLTKKPDPVDVRRGLLARANVLALRGYGPFEVSVNGEPVKPEELRGSTLLPVNITTEYGKITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNDFEHDSTQWRVFEKAMRGFVKNKVYKFLKQT