Scaffold Ga0209648_10018238

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10018238
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6130
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004288	Metagenome / Metatranscriptome	445	Y
F014602	Metagenome	261	Y
F046930	Metagenome	150	Y
F051726	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100182386	F046930	GGAGG	MPRLISIISALALLLTGAWLLNDGVLARDPLHLQIEIIAGATLLSAVVVCSVLLLRDWIKWKRELGKYREG
Ga0209648_100182387	F051726	GGAG	MSMSQRQVYRCQNRTCGCEIAVTKTSVETRANPRCFCGAEMKKRYSPPVFRMLDPDDELVGRLEAERNLTS
Ga0209648_100182388	F004288	GAGG	MDGARHFNGRIEKRLPTLVPVYLASLEEPRSRERTLTENVSPHGARVISQRFWQSGEESLITPLTGEFRQVGRVIYCLPTAGDRFCLGVKFPDRIVKWREHSSA
Ga0209648_100182389	F014602	GAG	MIDSWTKKSPSGKTVTFKIEGDGKCFVYSAGMGGRDIKEITGYLKVLTREDVEIMFANYVARK