Scaffold Ga0209648

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10017225 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209648_10017225 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6302
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (100.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6302

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (100.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014771	Metagenome	260	Y
F019704	Metagenome	228	Y
F021893	Metagenome	217	Y
F073304	Metagenome	120	N
F093562	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1001722510	F073304	AGGA	MATRSWHSRGLPSWRIWLISRLGRLRNIKNLAPGELPFAGGLVLLLAASMLWRAFPMVVTGAVLVLILQEIADPSPLFLAVPWEALEFVLSRKVRANHFWLHRTQGLLRESGDALAKIDGCATRDGFFLIGAAFNETQIQRASQSAWRAMCRKPSAKEAATGCKTMQFLLALWLIAGGLAALSLFRGVDLGSGLLLCALCGAAGQLLARPAEKLLGPWAGRVACSNKETWPSRLEVESLAIPRFLWFKRSLVFQVRRTPTQGSNEG
Ga0209648_1001722511	F021893	AGGAG	MPDYYTSQQLAQALGIAEATVTALQTKGLLQPTVKDGRSFFSCRQAHCLRAALRWARKDKIDLQVAFARVEERWLAHTSATKD
Ga0209648_100172255	F014771	AGGAG	MKARGSITQLLRNRRPGYIQGEDGCLVAFDESALGGLDPRELSVGDWVEYEELDRGEGRRAAKIKPLIQRAEE
Ga0209648_100172258	F019704	GGAGG	MKRRTRVKELMQREGLRGEIVQLFHSRRTGIIHGDDGYDVTFNEESLVVGLSYGELSLGLRVSYGIFFATGAKLPTGINVQPAVGGPTATSEDAENVISARAGGTGVM
Ga0209648_100172259	F093562	GAGG	MNARSRLLAEAEKQISNPFVLCTLVSLRTRQLMMTGNANTSTAQLVDSALNDLIAGVLEFERGKPRRPPLTRAESRNEGSNGGLESPGVPELPRTLSAEAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209648_10017225

Overview

Ecosystem & Geography

Associated Families

Sequences