Scaffold Ga0209648_10017216

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10017216
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6304
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005419	Metagenome / Metatranscriptome	401	Y
F026317	Metagenome / Metatranscriptome	198	Y
F034101	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100172162	F005419	AGGAGG	MVAAGAAGAVGQGKGPEASSPSRGPRKVRVGQGMEVQRFFLAKTGGNNGVPEFSKEVPGEPEAMMESLKTGLSYFVVSEWRGVADFSGKKPQLGREAVRSAPKAG
Ga0209648_100172165	F034101	N/A	MPVSVSPREIHDWIEESLGQRPNIGLRKAIVNMFFVTPNPFDPRARRIPKTGFLVGTILFAASLGCFCYFNFAR
Ga0209648_100172166	F026317	AGCAGG	MAFFVQLLELVVVLLPDPLTLGLFTLALFNLCCIAKTLHVAGTLDTDAALGISLAIGYLITIAINILSSGQAPARPTITTVVQSKSNVQQAGRESSSNTVGSQPVGHRDAVIES