Scaffold Ga0209648_10006767

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10006767
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9860
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003526	Metagenome / Metatranscriptome	481	Y
F004353	Metagenome / Metatranscriptome	442	Y
F010390	Metagenome / Metatranscriptome	304	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000676710	F010390	AGAAGG	MRHSFAAVLCSISLLASAAPAQSPDVAPVRVAAGTVLKFHLQTRFHPTAGDALDALPKGTVLQVRILDTVDSAVDRDGTKFHGMLAVPLLLGSEVIVPSDAEVRGLLVLLRSRSHPDGFRYELLLTGLTDRGKSYDLTASLNPSFLDSGDQPAPSPKSATK
Ga0209648_1000676711	F003526	AGGAG	MKIKLLVSMIAVSTLLLVPALAFANDKDDEVRTLTGCLTKAEGAHEYKLTTENGATWELHSKSVKLSPHRGHTVTVTGKVRNADMHEAKEKVKDEMKEHGMDKDATEHGHLTVTKLNMVSDSCKR
Ga0209648_100067679	F004353	AGGAGG	MRTVGRVIFSTLTSLALAAAVWALPPTHSTAMLGLSSQDAAQQQSVSGKIASVEKNSFTLTVGQSQTSGDKNNLQSEPGNPKTMVFQLDKNTTIEGSLKVGASADVTYRQEKGANIAISVHVTP