Scaffold Ga0209648_10003829

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10003829
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12722
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F005283	Metagenome / Metatranscriptome	406	Y
F018221	Metagenome / Metatranscriptome	236	Y
F044929	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000382910	F000188	AGGGGG	MSVKPELAFDVCWEVYRGAREVLEAKRGMSAMDWKEATKFLWRPDFRPRLAEWVADFALAGQAALEAPECASRMVLFRLYYLGLAPYENARHFLGLSEQGWVNWSEEVRRRCGKELLRRSMFPPRKYFQC
Ga0209648_1000382911	F018221	AGGAGG	MGRKRGSSTARRVAPTQRDVLRDVMLAAGKYGAWMTLRELARLTRYGETSISAQLRHLRKAQCGGYVLEKRVRKPEVVSSEEHFVVWEYRLTPRRTARLRGSTHDARAVRR
Ga0209648_1000382917	F005283	N/A	MPELTPQQMKTLERLFAAGFRPIAIPPYENALCVHRGECAAVLTPVPNGGLRLLAPPTYLIDGNLGVKLRKGNREVFVWKKKEMDATVERLQELEAFRRELTSILEEAVPQ
Ga0209648_100038295	F044929	GGAGG	MKRTLQLASGISVLFTTLAFGHIMFHDTAHIMSHHDESPLFLIAHTILAVALGVLSLIGAYFLLTGWRRQNPG